Abstract
The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a data and analysis resource for selected NIAID priority pathogens, specifically proteobacteria of the genera Brucella, Rickettsia and Coxiella, and corona-, calici- and lyssaviruses and viruses associated with hepatitis A and E. The goal of the project is to provide a comprehensive bioinformatics resource for these pathogens, including consistently annotated genome, proteome and metabolic pathway data to facilitate research into counter-measures, including drugs, vaccines and diagnostics. The project's curation strategy has three prongs: 'breadth first' beginning with whole-genome and proteome curation using standardized protocols, a 'targeted' approach addressing the specific needs of researchers and an integrative strategy to leverage high-throughput experimental data (e.g. microarrays, proteomics) and literature. The PATRIC infrastructure consists of a relational database, analytical pipelines and a website which supports browsing, querying, data visualization and the ability to download raw and curated data in standard formats. At present, the site warehouses complete sequences for 17 bacterial and 332 viral genomes. The PATRIC website (https://patric.vbi.vt.edu) will continually grow with the addition of data, analysis and functionality over the course of the project.Sponsors
National Institute of Allergy and Infectious Diseases, NIAID: HHSN266200400035CKeyword
PathoSystems Resource Integration Center (PATRIC)coronaviruses
Data Warehousing
Computational Biology
Hepatitis A
Hepatitis E
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https://www.scopus.com/inward/record.uri?eid=2-s2.0-33846082223&doi=10.1093%2fnar%2fgkl858&partnerID=40&md5=9edea76e4060b839ed45a36060d89e42; http://hdl.handle.net/10713/12435ae974a485f413a2113503eed53cd6c53
10.1093/nar/gkl858
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