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dc.contributor.authorSiegele, D.A.
dc.contributor.authorLabonte, S.A.
dc.contributor.authorWu, P.I.-F.
dc.date.accessioned2019-09-13T16:42:01Z
dc.date.available2019-09-13T16:42:01Z
dc.date.issued2019
dc.identifier.urihttps://www.scopus.com/inward/record.uri?eid=2-s2.0-85069045114&doi=10.1186%2fs13326-019-0205-5&partnerID=40&md5=111fca2a2e798c827337586acf069bb2
dc.identifier.urihttp://hdl.handle.net/10713/10718
dc.description.abstractBackground: Microbial genetics has formed a foundation for understanding many aspects of biology. Systematic annotation that supports computational data mining should reveal further insights for microbes, microbiomes, and conserved functions beyond microbes. The Ontology of Microbial Phenotypes (OMP) was created to support such annotation. Results: We define standards for an OMP-based annotation framework that supports the capture of a variety of phenotypes and provides flexibility for different levels of detail based on a combination of pre- and post-composition using OMP and other Open Biomedical Ontology (OBO) projects. A system for entering and viewing OMP annotations has been added to our online, public, web-based data portal. Conclusions: The annotation framework described here is ready to support projects to capture phenotypes from the experimental literature for a variety of microbes. Defining the OMP annotation standard should support the development of new software tools for data mining and analysis in comparative phenomics. Copyright 2019 The Author(s).en_US
dc.description.sponsorshipThis work was supported by a grants from the National Science Foundation Division of Biological Infrastructure [1458400] and the National Institutes of Health [R01GM089636, U41HG008735].en_US
dc.description.urihttps://doi.org/10.1186/s13326-019-0205-5en_US
dc.language.isoen-USen_US
dc.publisherBioMed Central Ltd.en_US
dc.relation.ispartofJournal of Biomedical Semantics
dc.subjectAnnotationen_US
dc.subjectBiomedical ontologiesen_US
dc.subjectCurationen_US
dc.subjectMicrobial geneticsen_US
dc.subjectMicrobial phenotypesen_US
dc.subjectMicrobiologyen_US
dc.subjectOntologyen_US
dc.subjectPhenotypesen_US
dc.titlePhenotype annotation with the ontology of microbial phenotypes (OMP)en_US
dc.typeArticleen_US
dc.identifier.doi10.1186/s13326-019-0205-5


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